Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.14" 2022-01-18; /Data/Tools/juicer1.6_compact/scripts/juicer.sh -t 10 -D /Data/Tools/juicer1.6_compact/ -g mm10 -z /Data/Tools/exoclasma/databases/mm10_Canonic/mm10_Canonic.fasta -p /Data/Tools/exoclasma/databases/mm10_Canonic/mm10_Canonic.chromsizes.txt -s DpnII -y /Data/Tools/exoclasma/databases/mm10_Canonic/mm10_Canonic.restriction_sites.DpnII.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Benchmark_Kit30/CapF5-CapF6                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  16,120,561
 Normal Paired: 8,770,857 (54.41%)
 Chimeric Paired: 6,095,399 (37.81%)
 Chimeric Ambiguous: 1,037,810 (6.44%)
 Unmapped: 216,495 (1.34%)
 Ligation Motif Present: 12,474,024 (77.38%)
Alignable (Normal+Chimeric Paired): 14,866,256 (92.22%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2022-03-18T22:21:51,806]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 13,139,870 (81.51%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 1,726,386 (10.71%)
Library Complexity Estimate: 0
Intra-fragment Reads: 2,290,577 (14.21% / 17.43%)
Below MAPQ Threshold: 1,116,572 (6.93% / 8.50%)
Hi-C Contacts: 9,732,721 (60.37% / 74.07%)
 Ligation Motif Present: 7,792,256  (48.34% / 59.30%)
 3' Bias (Long Range): 68% - 32%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 2,790,023  (17.31% / 21.23%)
Intra-chromosomal: 6,942,698  (43.07% / 52.84%)
Short Range (<20Kb): 3,130,550  (19.42% / 23.82%)
Long Range (>20Kb): 3,812,139  (23.65% / 29.01%)